\documentclass[a4paper,10pt]{book}

\usepackage{color}
\usepackage{bm}
\usepackage{amsmath}
\usepackage{appendix}
\usepackage{xspace}
\usepackage{a4wide}
\usepackage{wrapfig}
\usepackage[numbers,comma,sort&compress]{natbib}
\usepackage{graphicx}
\usepackage{xstring}
\usepackage{listings,xcolor,courier}
%\usepackage{draftcopy}
\usepackage{longtable}
\usepackage{paralist}

\usepackage
[dvips, %or dvips or pdftex
pagebackref, %or backref
colorlinks=true,
linkcolor=webgreen, %defined below
filecolor=webbrown, %defined below
citecolor=webgreen, %defined below
pdftitle={VOTCA manual},
pdfauthor={},
pdfsubject={VOTCA},
pdfkeywords={coarse-graining boltzmann inversion monte carlo force matching},
bookmarksopen=false,
pdfpagemode=UseNone]{hyperref}

\definecolor{webgreen}{rgb}{0,.5,0}
\definecolor{webbrown}{rgb}{.6,0,0}
\pdfcompresslevel=9

\usepackage[T1]{fontenc}
%\usepackage{times}
\usepackage{type1cm}

\input{newcommands}

\begin{document}
\frontmatter
\include{titlepage}
\thispagestyle{empty}
\cleardoublepage

\tableofcontents
\cleardoublepage
\mainmatter
\include{introduction}
\include{theory}
\include{inputfiles}
\include{usage/cgruns}
\include{usage}
\include{advanced_topics}
\include{reference}

\bibliographystyle{unsrt}
\bibliography{votca}

\end{document} 
